Package: REddyProc 1.3.3
REddyProc: Post Processing of (Half-)Hourly Eddy-Covariance Measurements
Standard and extensible Eddy-Covariance data post-processing (Wutzler et al. (2018) <doi:10.5194/bg-15-5015-2018>) includes uStar-filtering, gap-filling, and flux-partitioning. The Eddy-Covariance (EC) micrometeorological technique quantifies continuous exchange fluxes of gases, energy, and momentum between an ecosystem and the atmosphere. It is important for understanding ecosystem dynamics and upscaling exchange fluxes. (Aubinet et al. (2012) <doi:10.1007/978-94-007-2351-1>). This package inputs pre-processed (half-)hourly data and supports further processing. First, a quality-check and filtering is performed based on the relationship between measured flux and friction velocity (uStar) to discard biased data (Papale et al. (2006) <doi:10.5194/bg-3-571-2006>). Second, gaps in the data are filled based on information from environmental conditions (Reichstein et al. (2005) <doi:10.1111/j.1365-2486.2005.001002.x>). Third, the net flux of carbon dioxide is partitioned into its gross fluxes in and out of the ecosystem by night-time based and day-time based approaches (Lasslop et al. (2010) <doi:10.1111/j.1365-2486.2009.02041.x>).
Authors:
REddyProc_1.3.3.tar.gz
REddyProc_1.3.3.zip(r-4.5)REddyProc_1.3.3.zip(r-4.4)REddyProc_1.3.3.zip(r-4.3)
REddyProc_1.3.3.tgz(r-4.4-x86_64)REddyProc_1.3.3.tgz(r-4.4-arm64)REddyProc_1.3.3.tgz(r-4.3-x86_64)REddyProc_1.3.3.tgz(r-4.3-arm64)
REddyProc_1.3.3.tar.gz(r-4.5-noble)REddyProc_1.3.3.tar.gz(r-4.4-noble)
REddyProc_1.3.3.tgz(r-4.4-emscripten)REddyProc_1.3.3.tgz(r-4.3-emscripten)
REddyProc.pdf |REddyProc.html✨
REddyProc/json (API)
NEWS
# Install 'REddyProc' in R: |
install.packages('REddyProc', repos = c('https://bgctw.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bgctw/reddyproc/issues
- DEGebExample - Eddy covariance data from Gebesee crop site, Germany
- Example_DETha98 - Eddy covariance data from Tharandt, Germany
Last updated 14 days agofrom:97591553e7. Checks:OK: 7 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 25 2024 |
R-4.5-win-x86_64 | NOTE | Nov 25 2024 |
R-4.5-linux-x86_64 | NOTE | Nov 25 2024 |
R-4.4-win-x86_64 | OK | Nov 25 2024 |
R-4.4-mac-x86_64 | OK | Nov 25 2024 |
R-4.4-mac-aarch64 | OK | Nov 25 2024 |
R-4.3-win-x86_64 | OK | Nov 25 2024 |
R-4.3-mac-x86_64 | OK | Nov 25 2024 |
R-4.3-mac-aarch64 | OK | Nov 25 2024 |
Exports:%>%BerkeleyJulianDateToPOSIXctestimate_vpd_from_dewextract_FN15fCalcAVPfromVMFandPressfCalcETfromLEfCalcExtRadiationfCalcPotRadiationfCalcRHfromAVPandTairfCalcSVPfromTairfCalcVPDfromRHandTairfCheckHHTimeSeriesfConvertCtoKfConvertGlobalToVisiblefConvertKtoCfConvertTimeToPosixfConvertVisibleWm2toPhotonsfilter_entire_daysfilter_years_eopfilterLongRunsfilterLongRunsInVectorfKeepColumnAttributesfLloydTaylorfLoadAmeriflux22fLoadEuroFlux16fLoadFluxnet15fLoadTXTIntoDataframefSplitDateTimefWriteDataframeToFilefWriteFrench23get_day_boundariesget_timestep_hoursgetAmerifluxToBGC05VariableNameMappinggetBGC05ToAmerifluxVariableNameMappinggetExamplePathgetFilledExampleDETha98DatagetREddyProcExampleDirgetTZonehelp_DateTimeshelp_exportLightResponseCurveFitterLightResponseCurveFitter_computeCostLightResponseCurveFitter_computeLRCGradientLightResponseCurveFitter_fitLRCLightResponseCurveFitter_getOptimizedParameterPositionsLightResponseCurveFitter_getParameterInitialsLightResponseCurveFitter_getParameterNamesLightResponseCurveFitter_getPriorLocationLightResponseCurveFitter_getPriorScaleLightResponseCurveFitter_isParameterInBoundsLightResponseCurveFitter_optimLRCLightResponseCurveFitter_optimLRCBoundsLightResponseCurveFitter_optimLRCOnAdjustedPriorLightResponseCurveFitter_predictGPPLightResponseCurveFitter_predictLRCLogisticSigmoidLRCFitterLogisticSigmoidLRCFitter_predictGPPNonrectangularLRCFitterNonrectangularLRCFitter_getParameterNamesNonrectangularLRCFitter_predictGPPpartGLControlpartGLControlLasslopCompatiblepartGLExtractStandardDatapartitionNEEGLPOSIXctToBerkeleyJulianDateread_from_ameriflux22read_from_fluxnet15RectangularLRCFitterRectangularLRCFitter_predictGPPRectangularLRCFitterCVersionREddyProc_defaultunitsrenameVariablesInDataframesEddyProcsEddyProc_initializesEddyProc_sApplyUStarScensEddyProc_sCalcPotRadiationsEddyProc_sEstimateUstarScenariossEddyProc_sEstUstarTholdsEddyProc_sEstUstarThresholdsEddyProc_sEstUstarThresholdDistributionsEddyProc_sExportDatasEddyProc_sExportResultssEddyProc_sFillInitsEddyProc_sFillLUTsEddyProc_sFillMDCsEddyProc_sFillVPDFromDewsEddyProc_sGetDatasEddyProc_sGetEstimatedUstarThresholdDistributionsEddyProc_sGetUstarScenariossEddyProc_sGetUstarSuffixessEddyProc_sGLFluxPartitionsEddyProc_sGLFluxPartitionUStarScenssEddyProc_sMDSGapFillsEddyProc_sMDSGapFillAfterUstarsEddyProc_sMDSGapFillAfterUStarDistrsEddyProc_sMDSGapFillUStarScenssEddyProc_sMRFluxPartitionsEddyProc_sMRFluxPartitionUStarScenssEddyProc_sPlotDailySumssEddyProc_sPlotDailySumsYsEddyProc_sPlotDiurnalCyclesEddyProc_sPlotDiurnalCycleMsEddyProc_sPlotFingerprintsEddyProc_sPlotFingerprintYsEddyProc_sPlotHHFluxessEddyProc_sPlotHHFluxesYsEddyProc_sPlotNEEVersusUStarForSeasonsEddyProc_sSetLocationInfosEddyProc_sSetUstarScenariossEddyProc_sSetUStarSeasonssEddyProc_sTKFluxPartitionsEddyProc_sTKFluxPartitionUStarScenssEddyProc_update_ustarthreshold_columnssEddyProc_useAnnualUStarThresholdssEddyProc_useSeaonsalUStarThresholdsusControlUstarEstusControlUstarSubsettingusCreateSeasonFactorMonthusCreateSeasonFactorMonthWithinYearusCreateSeasonFactorYdayusCreateSeasonFactorYdayYearusEstUstarThresholdusEstUstarThresholdSingleFw1BinnedusEstUstarThresholdSingleFw2BinnedusGetAnnualSeasonUStarMapusGetSeasonalSeasonUStarMapusGetYearOfSeason
Dependencies:bigleafbitbit64clicliprcpp11crayonDEoptimRdplyrfansigenericsgluehmslifecyclelubridatemagrittrmlegppillarpkgconfigprettyunitsprogresspurrrR6Rcppreadrrlangrobustbasesolartimetibbletidyselecttimechangetzdbutf8vctrsvroomwithr
DEGeb example: UStar estimation
Rendered fromDEGebExample.Rmd
usingknitr::knitr
on Nov 25 2024.Last update: 2019-03-30
Started: 2016-01-29
different treatments of uStar threshold
Rendered fromuStarCases.Rmd
usingknitr::knitr
on Nov 25 2024.Last update: 2019-05-23
Started: 2018-01-08
extended use of gap-filling
Rendered fromgapFilling.Rmd
usingknitr::knitr
on Nov 25 2024.Last update: 2018-10-17
Started: 2018-01-08
REddyProc typical workflow
Rendered fromuseCase.Rmd
usingknitr::rmarkdown_notangle
on Nov 25 2024.Last update: 2023-01-20
Started: 2018-01-08
Uncertainty aggregation
Rendered fromaggUncertainty.Rmd
usingknitr::rmarkdown_notangle
on Nov 25 2024.Last update: 2022-09-02
Started: 2018-10-18
Using bigleaf functions
Rendered frombigleaf.Rmd
usingknitr::rmarkdown_notangle
on Nov 25 2024.Last update: 2022-01-27
Started: 2019-03-29